If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 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'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 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'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 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'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 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'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 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'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 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'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 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=> 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 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'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' 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'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 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'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 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=> 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 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'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 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'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 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'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 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'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 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'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 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'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 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'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 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'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 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=> 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 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'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' 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'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 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'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 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=> 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 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'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 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'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 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'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 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'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 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'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 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'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 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'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 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'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 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=> 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 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'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' 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'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 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'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 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=> 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 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'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 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'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 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'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 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'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 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'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 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'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 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'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 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'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 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=> 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 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'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' 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'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 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'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 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=> 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 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'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 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'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 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'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 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'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 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'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 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'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 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'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 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'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 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=> 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 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'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' 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'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 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'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 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=> 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 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'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 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'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 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'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 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'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 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'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 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'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 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'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 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'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 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=> 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 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'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' 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'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 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'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 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=> 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 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'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 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'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 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'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 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'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 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'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 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'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 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'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 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'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 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=> 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 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'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' 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'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 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'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 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=> 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 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'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 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'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 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'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 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'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 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'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 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'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 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'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 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'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 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=> 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 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'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' 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'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 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'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 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=> 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 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'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 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'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 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'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 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'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 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'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 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'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 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'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 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'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 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=> 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 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'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' 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'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 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'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 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=> 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 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'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 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'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 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'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 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'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 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'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 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'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 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'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 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'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 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=> 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 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'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' 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'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 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'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 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=> 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 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'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 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'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 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'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 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'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 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'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 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'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 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'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 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'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 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=> 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 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'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' 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'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 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'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 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=> 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 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'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 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'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 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'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 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'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 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'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 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'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 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'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 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'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 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=> 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 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'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' 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'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 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'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 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=> 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 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'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 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'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 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'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 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'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 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'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 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'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 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'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 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'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 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=> 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 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'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' 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'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 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'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 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=> 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 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'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 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'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 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'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 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'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 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'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 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'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 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'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 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'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 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=> 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 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'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' 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'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 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'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 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=> 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 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'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 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'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 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'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 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'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 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'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 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'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 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'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 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'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 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=> 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 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'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' 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'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 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'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 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=> 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 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'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 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'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 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'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 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'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 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'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 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'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 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'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 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'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 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=> 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 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'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' 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'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 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'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 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'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 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'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 'FAN06G3867' => 'fan', 'FAN10G0456' => 'fan', 'FAN10G1476' => 'fan', 'FAN10G1807' => 'fan', 'FvH4_7g26643' => 'fve', 'FvH4_7g26670' => 'fve', 'Glyma.04G058500' => 'gma', 'Glyma.06G059300' => 'gma', 'Glyma.06G237432' => 'gma', 'Glyma.06G237900' => 'gma', 'Glyma.06G241300' => 'gma', 'Glyma.06G241600' => 'gma', 'Glyma.06G242000' => 'gma', 'Glyma.12G162927' => 'gma', 'Gohir.A03G003850' => 'ghi', 'Gohir.A03G004000' => 'ghi', 'Gohir.A05G294000' => 'ghi', 'Gohir.A05G299800' => 'ghi', 'Gohir.A05G299900' => 'ghi', 'Gohir.A05G300000' => 'ghi', 'Gohir.A05G300066' => 'ghi', 'Gohir.A05G300200' => 'ghi', 'Gohir.A05G300266' => 'ghi', 'Gohir.A05G300400' => 'ghi', 'Gohir.A08G057300' => 'ghi', 'Gohir.A08G164900' => 'ghi', 'Gohir.A08G249912' => 'ghi', 'Gohir.A08G249924' => 'ghi', 'Gohir.A08G249936' => 'ghi', 'Gohir.A08G249948' => 'ghi', 'Gohir.A09G083760' => 'ghi', 'Gohir.A09G083780' => 'ghi', 'Gohir.A10G119950' => 'ghi', 'Gohir.A10G213100' => 'ghi', 'Gohir.A10G213200' => 'ghi', 'Gohir.A10G213300' => 'ghi', 'Gohir.A10G229533' => 'ghi', 'Gohir.A10G229566' => 'ghi', 'Gohir.A10G230300' => 'ghi', 'Gohir.A12G213100' => 'ghi', 'Gohir.D03G167150' => 'ghi', 'Gohir.D03G168400' => 'ghi', 'Gohir.D03G168550' => 'ghi', 'Gohir.D05G294700' => 'ghi', 'Gohir.D05G299600' => 'ghi', 'Gohir.D05G299700' => 'ghi', 'Gohir.D05G299800' => 'ghi', 'Gohir.D05G299900' => 'ghi', 'Gohir.D05G300000' => 'ghi', 'Gohir.D05G300050' => 'ghi', 'Gohir.D05G300100' => 'ghi', 'Gohir.D08G066500' => 'ghi', 'Gohir.D08G066600' => 'ghi', 'Gohir.D08G183500' => 'ghi', 'Gohir.D08G270800' => 'ghi', 'Gohir.D08G270850' => 'ghi', 'Gohir.D08G270951' => 'ghi', 'Gohir.D08G271000' => 'ghi', 'Gohir.D08G271200' => 'ghi', 'Gohir.D08G271300' => 'ghi', 'Gohir.D09G083650' => 'ghi', 'Gohir.D09G083675' => 'ghi', 'Gohir.D10G146400' => 'ghi', 'Gohir.D10G220950' => 'ghi', 'Gohir.D10G221000' => 'ghi', 'Gohir.D10G221033' => 'ghi', 'Gohir.D10G221066' => 'ghi', 'Gohir.D10G221100' => 'ghi', 'Gohir.D10G221250' => 'ghi', 'Gohir.D10G221300' => 'ghi', 'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 'MBI01_g39830_MAGBIO' => 'mbi', 'MBI01_g43189_MAGBIO' => 'mbi', 'MBI02_g28325_MAGBIO' => 'mbi', 'MBI02_g29974_MAGBIO' => 'mbi', 'MD01G1175400' => 'mdo', 'MD04G1235200' => 'mdo', 'MD07G1241300' => 'mdo', 'MD07G1241500' => 'mdo', 'MD12G1230800' => 'mdo', 'MD12G1230900' => 'mdo', 'MD12G1231100' => 'mdo', 'MD12G1231200' => 'mdo', 'Medtr1g059930' => 'mtr', 'Medtr3g016210' => 'mtr', 'Medtr3g105650' => 'mtr', 'Medtr7g021090' => 'mtr', 'Medtr7g451420' => 'mtr', 'Medtr8g039620' => 'mtr', 'Medtr8g040930' => 'mtr', 'Medtr8g041240' => 'mtr', 'Medtr8g062410' => 'mtr', 'Medtr8g068990' => 'mtr', 'Medtr8g069880' => 'mtr', 'Medtr8g072510' => 'mtr', 'Medtr8g073260' => 'mtr', 'Medtr8g073275' => 'mtr', 'Medtr8g467780' => 'mtr', 'Migut.A00755' => 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 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'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 'lonja', 'Lj7P549T22' => 'lonja', 'Lsat_1_v5_gn_1_84001' => 'lsa', 'Lsat_1_v5_gn_1_84300' => 'lsa', 'Manes.01G088000' => 'mes', 'Manes.08G055200' => 'mes', 'Manes.08G063800' => 'mes', 'Manes.09G064501' => 'mes', 'Manes.09G064600' => 'mes', 'Manes.14G041000' => 'mes', 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'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 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'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ), 'gf_id' => 'HOM05D000480', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000480' ), 'data_identifier' => 'HOM05D000480', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000480', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1104', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p07190' => 'bna', 'A03p14520' => 'bna', 'A03p14530' => 'bna', 'A05p04880' => 'bna', 'A05p04900' => 'bna', 'A06p10520' => 'bna', 'A06p10530' => 'bna', 'A06p10540' => 'bna', 'A06p34460' => 'bna', 'A08p20310' => 'bna', 'A09p28220' => 'bna', 'A09p28510' => 'bna', 'A09p60940' => 'bna', 'A09p62090' => 'bna', 'A09p65550' => 'bna', 'A10p11890' => 'bna', 'Aa31LG1G560' => 'aar', 'Aa31LG1G570' => 'aar', 'Aa31LG2G13160' => 'aar', 'Aa31LG9G11340' => 'aar', 'Aa31LG9G11380' => 'aar', 'Actinidia01028' => 'ach', 'Actinidia01031' => 'ach', 'Actinidia02166' => 'ach', 'Actinidia07258' => 'ach', 'Actinidia14391' => 'ach', 'Actinidia14393' => 'ach', 'Actinidia20124' => 'ach', 'Actinidia20127' => 'ach', 'Actinidia20128' => 'ach', 'Actinidia21628' => 'ach', 'Actinidia21630' => 'ach', 'Actinidia25362' => 'ach', 'Ah.01g018240' => 'amhyb', 'Ah.07g199190' => 'amhyb', 'AL1G26380' => 'aly', 'AL6G26350' => 'aly', 'AL6G44770' => 'aly', 'AL8G30070' => 'aly', 'Aqoxy1G03436' => 'aox', 'Aqoxy6G01040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09JDW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FAI2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71GJM4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FDQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT5HYM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GU1UEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBU02Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX2NAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI7X46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU9RLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJF49H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4K0HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8NE4R' => 'arhy', 'AT1G14480' => 'ath', 'AT1G14500' => 'ath', 'AT4G10720' => 'ath', 'AT4G11000' => 'ath', 'AT5G15500' => 'ath', 'AT5G54610' => 'ath', 'AT5G54620' => 'ath', 'ATR0315G168' => 'atr', 'ATR0705G165' => 'atr', 'ATR0705G177' => 'atr', 'ATR1149G077' => 'atr', 'Atru.chr1.888' => 'acertr', 'Atru.chr1.897' => 'acertr', 'Atru.chr1.900' => 'acertr', 'Atru.chr11.181' => 'acertr', 'Atru.chr5.104' => 'acertr', 'Atru.chr5.150' => 'acertr', 'AUR62004076' => 'cqu', 'AUR62007163' => 'cqu', 'AUR62007588' => 'cqu', 'AUR62007589' => 'cqu', 'AUR62009254' => 'cqu', 'AUR62018843' => 'cqu', 'AUR62044581' => 'cqu', 'AUR62044582' => 'cqu', 'BcaB01g01064' => 'bca', 'BcaB01g01508' => 'bca', 'BcaB01g01574' => 'bca', 'BcaB01g01575' => 'bca', 'BcaB01g01576' => 'bca', 'BcaB01g01725' => 'bca', 'BcaB01g01726' => 'bca', 'BcaB01g02725' => 'bca', 'BcaB01g04303' => 'bca', 'BcaB01g04304' => 'bca', 'BcaB01g04305' => 'bca', 'BcaB01g05046' => 'bca', 'BcaB01g05047' => 'bca', 'BcaB02g06498' => 'bca', 'BcaB02g06499' => 'bca', 'BcaB02g06501' => 'bca', 'BcaB02g06502' => 'bca', 'BcaB02g08852' => 'bca', 'BcaB02g08854' => 'bca', 'BcaB04g18386' => 'bca', 'BcaB05g22330' => 'bca', 'BcaB05g22692' => 'bca', 'BcaB08g34399' => 'bca', 'BcaB08g34400' => 'bca', 'BcaB08g34401' => 'bca', 'BcaB08g35822' => 'bca', 'BcaB08g35823' => 'bca', 'BcaC01g06315' => 'bca', 'BcaC02g12275' => 'bca', 'BcaC02g12277' => 'bca', 'BcaC02g12278' => 'bca', 'BcaC03g14171' => 'bca', 'BcaC03g14172' => 'bca', 'BcaC03g16380' => 'bca', 'BcaC04g20322' => 'bca', 'BcaC04g21065' => 'bca', 'BcaC04g21067' => 'bca', 'BcaC04g21204' => 'bca', 'BcaC05g24424' => 'bca', 'BcaC05g24430' => 'bca', 'BcaC05g25352' => 'bca', 'BcaC05g25354' => 'bca', 'BcaC05g25355' => 'bca', 'BcaC05g25356' => 'bca', 'BcaC06g33522' => 'bca', 'BcaC06g33524' => 'bca', 'BcaC06g33526' => 'bca', 'BcaC06g33527' => 'bca', 'BcaC06g33534' => 'bca', 'BcaC07g41568' => 'bca', 'BcaC07g41569' => 'bca', 'BcaC07g41570' => 'bca', 'BcaC07g41571' => 'bca', 'BcaC07g41899' => 'bca', 'BcaC07g41900' => 'bca', 'BcaNung00129' => 'bca', 'BcaNung03735' => 'bca', 'BcaNung04660' => 'bca', 'BcaNung04661' => 'bca', 'BcaNung04662' => 'bca', 'BcaNung04663' => 'bca', 'BolC1t02492H' => 'bol', 'BolC2t07568H' => 'bol', 'BolC2t07571H' => 'bol', 'BolC2t10237H' => 'bol', 'BolC3t13315H' => 'bol', 'BolC3t14110H' => 'bol', 'BolC4t22200H' => 'bol', 'BolC4t22202H' => 'bol', 'BolC5t29113H' => 'bol', 'BolC5t29983H' => 'bol', 'BolC5t29984H' => 'bol', 'BolC5t29986H' => 'bol', 'BolC5t29987H' => 'bol', 'BolC7t44934H' => 'bol', 'BolC7t45364H' => 'bol', 'BolC8t52123H' => 'bol', 'BolC8t52124H' => 'bol', 'BolC8t52491H' => 'bol', 'BolC9t56278H' => 'bol', 'BolC9t56410H' => 'bol', 'BolC9t56446H' => 'bol', 'BolC9t56448H' => 'bol', 'BolC9t57303H' => 'bol', 'BolC9t57374H' => 'bol', 'BraA01t01952Z' => 'bra', 'BraA03t10041Z' => 'bra', 'BraA05t19462Z' => 'bra', 'BraA05t19464Z' => 'bra', 'BraA06t24233Z' => 'bra', 'BraA06t24234Z' => 'bra', 'BraA06t26374Z' => 'bra', 'BraA06t26905Z' => 'bra', 'BraA09t36340Z' => 'bra', 'BraA09t38388Z' => 'bra', 'BraA09t41467Z' => 'bra', 'BraA09t41574Z' => 'bra', 'BraA09t41575Z' => 'bra', 'BraA09t41900Z' => 'bra', 'BraA10t43286Z' => 'bra', 'C01p25400' => 'bna', 'C02p14440' => 'bna', 'C02p14460' => 'bna', 'C02p42020' => 'bna', 'C03p08180' => 'bna', 'C03p16980' => 'bna', 'C04p05700' => 'bna', 'C04p05720' => 'bna', 'C05p12350' => 'bna', 'C05p12360' => 'bna', 'C05p12380' => 'bna', 'C05p12390' => 'bna', 'C05p12400' => 'bna', 'C05p12410' => 'bna', 'C07p44090' => 'bna', 'C07p48560' => 'bna', 'C08p45690' => 'bna', 'C08p49540' => 'bna', 'C08p49550' => 'bna', 'C08p49580' => 'bna', 'C08p49600' => 'bna', 'C09p34350' => 'bna', 'C09p35750' => 'bna', 'C09p36070' => 'bna', 'C09p44310' => 'bna', 'C09p44960' => 'bna', 'CAN.G1585.2' => 'can', 'CAN.G1585.3' => 'can', 'CAN.G2133.1' => 'can', 'CAN.G2133.2' => 'can', 'CAN.G572.6' => 'can', 'CAN.G638.29' => 'can', 'CAN.G756.41' => 'can', 'CAN.G756.43' => 'can', 'CAN.G756.48' => 'can', 'CAN.G756.49' => 'can', 'CAN.G756.50' => 'can', 'CAN.G756.52' => 'can', 'CAN.G756.55' => 'can', 'CAN.G919.32' => 'can', 'CANSAT21G0045' => 'cansat', 'CANSAT21G1221' => 'cansat', 'CANSAT21G1361' => 'cansat', 'CANSAT25G0074' => 'cansat', 'CANSAT25G3728' => 'cansat', 'CANSAT56G0672' => 'cansat', 'CANSAT56G2348' => 'cansat', 'CARHR014950' => 'chi', 'CARHR102590' => 'chi', 'CARHR139950' => 'chi', 'CARHR197810' => 'chi', 'CARHR223630' => 'chi', 'CARHR255620' => 'chi', 'CARHR255880' => 'chi', 'CARHR267900' => 'chi', 'CARHR267910' => 'chi', 'CARHR267920' => 'chi', 'CARHR267930' => 'chi', 'Carub.0001s1420' => 'cru', 'Carub.0001s1422' => 'cru', 'Carub.0004s2729' => 'cru', 'Carub.0004s2730' => 'cru', 'Carub.0006s1366' => 'cru', 'Carub.0006s2949' => 'cru', 'Carub.0006s2975' => 'cru', 'Carub.0006s3131' => 'cru', 'Carub.0006s3173' => 'cru', 'Carub.0008s1488' => 'cru', 'Ca_21800_v3' => 'car', 'Ca_22756_v3' => 'car', 'Ca_26580_v3' => 'car', 'Ca_26581_v3' => 'car', 'Ca_26582_v3' => 'car', 'Cc00_g18020' => 'ccan', 'Cc00_g32620' => 'ccan', 'Cc00_g35640' => 'ccan', 'Cc00_g35680' => 'ccan', 'Cc01_g07190' => 'ccan', 'Cc01_g07200' => 'ccan', 'Cc01_g07220' => 'ccan', 'Cc01_g07230' => 'ccan', 'Cc02_g25340' => 'ccan', 'Cc02_g25360' => 'ccan', 'Cfa004478' => 'cfa', 'Cfa004479' => 'cfa', 'Cfa006390' => 'cfa', 'Cfa010028' => 'cfa', 'Cfa010029' => 'cfa', 'Cfa010311' => 'cfa', 'Cfa012289' => 'cfa', 'Cfa012310' => 'cfa', 'Cfa012311' => 'cfa', 'Cfa012314' => 'cfa', 'Cfa012315' => 'cfa', 'Cfa012316' => 'cfa', 'Cfa012317' => 'cfa', 'Cfa012318' => 'cfa', 'Cfa012319' => 'cfa', 'Cfa012320' => 'cfa', 'Cfa012321' => 'cfa', 'Cfa012322' => 'cfa', 'Cfa012323' => 'cfa', 'Cfa012460' => 'cfa', 'Cfa012461' => 'cfa', 'Cfa012608' => 'cfa', 'Cfa012609' => 'cfa', 'Cfa012962' => 'cfa', 'Cfa013603' => 'cfa', 'Cfa014364' => 'cfa', 'Cfa014365' => 'cfa', 'Cfa014367' => 'cfa', 'Cfa014368' => 'cfa', 'Cfa014369' => 'cfa', 'Cfa014370' => 'cfa', 'Cfa014376' => 'cfa', 'Cfa014598' => 'cfa', 'Cfa014687' => 'cfa', 'Cfa017739' => 'cfa', 'Cfa019325' => 'cfa', 'Cfa019329' => 'cfa', 'Cfa021125' => 'cfa', 'Cfa021225' => 'cfa', 'Cfa021235' => 'cfa', 'Cfa021307' => 'cfa', 'Ciclev10004969m.g' => 'ccl', 'Ciclev10004971m.g' => 'ccl', 'Ciclev10005633m.g' => 'ccl', 'Ciclev10006376m.g' => 'ccl', 'Ciclev10006604m.g' => 'ccl', 'Ciclev10006785m.g' => 'ccl', 'Ciclev10007066m.g' => 'ccl', 'Ciclev10007127m.g' => 'ccl', 'Ciclev10019208m.g' => 'ccl', 'Ciclev10019454m.g' => 'ccl', 'Ciclev10019837m.g' => 'ccl', 'Ciclev10020060m.g' => 'ccl', 'Ciclev10020289m.g' => 'ccl', 'Ciclev10020490m.g' => 'ccl', 'Ciclev10023280m.g' => 'ccl', 'Ciclev10023439m.g' => 'ccl', 'Ciclev10023468m.g' => 'ccl', 'Ciclev10023725m.g' => 'ccl', 'Ciclev10023835m.g' => 'ccl', 'Ciclev10024088m.g' => 'ccl', 'Ciclev10024144m.g' => 'ccl', 'Ciclev10024160m.g' => 'ccl', 'Ciclev10024221m.g' => 'ccl', 'Ciclev10024339m.g' => 'ccl', 'Ciclev10024369m.g' => 'ccl', 'Ciclev10024394m.g' => 'ccl', 'Ciclev10031687m.g' => 'ccl', 'Ciclev10033891m.g' => 'ccl', 'CiPaw.11G073200' => 'cil', 'CiPaw.11G073300' => 'cil', 'CiPaw.11G073500' => 'cil', 'CiPaw.11G073600' => 'cil', 'CiPaw.14G018700' => 'cil', 'CiPaw.14G019200' => 'cil', 'ClCG09G012690' => 'cla', 'ClCG09G012700' => 'cla', 'COL.COLO4_07198' => 'col', 'COL.COLO4_10975' => 'col', 'COL.COLO4_14893' => 'col', 'COL.COLO4_14898' => 'col', 'COL.COLO4_14903' => 'col', 'COL.COLO4_14909' => 'col', 'COL.COLO4_14910' => 'col', 'COL.COLO4_14916' => 'col', 'COL.COLO4_14917' => 'col', 'COL.COLO4_14918' => 'col', 'Cpa.g.sc1.345' => 'cpa', 'Cpa.g.sc13.223' => 'cpa', 'Cpa.g.sc13.225' => 'cpa', 'Cpa.g.sc13.229' => 'cpa', 'CSS0006989' => 'camsi', 'CSS0022140' => 'camsi', 'CSS0039192' => 'camsi', 'CSS0045251' => 'camsi', 'DCAR_022796' => 'dca', 'DCAR_030898' => 'dca', 'Dinv01568' => 'din', 'Dinv01569' => 'din', 'Dinv01570' => 'din', 'Dinv15411' => 'din', 'Dinv15988' => 'din', 'Dinv25119' => 'din', 'Dinv25120' => 'din', 'Dinv25121' => 'din', 'Dinv25122' => 'din', 'Dinv25123' => 'din', 'Dinv25124' => 'din', 'Dinv25125' => 'din', 'Dinv25126' => 'din', 'Dinv25127' => 'din', 'Dinv25128' => 'din', 'Dinv25129' => 'din', 'Dinv25130' => 'din', 'Dinv25131' => 'din', 'Dinv25132' => 'din', 'Dinv25162' => 'din', 'Dinv25163' => 'din', 'Dinv25164' => 'din', 'Dinv25165' => 'din', 'Dinv25166' => 'din', 'Dinv25167' => 'din', 'Dinv25265' => 'din', 'Dinv29339' => 'din', 'Dinv36219' => 'din', 'Dinv44040' => 'din', 'Dinv44042' => 'din', 'Duzib084G0671' => 'dzi', 'Duzib106G0242' => 'dzi', 'Duzib106G0393' => 'dzi', 'Duzib106G0479' => 'dzi', 'Duzib106G0491' => 'dzi', 'Duzib106G0514' => 'dzi', 'Duzib106G0542' => 'dzi', 'Duzib106G0677' => 'dzi', 'Duzib106G0759' => 'dzi', 'Duzib106G1079' => 'dzi', 'Duzib106G1095' => 'dzi', 'Duzib106G1198' => 'dzi', 'Duzib106G1550' => 'dzi', 'Duzib106G1829' => 'dzi', 'Duzib114G0019' => 'dzi', 'Duzib114G0288' => 'dzi', 'Duzib114G0567' => 'dzi', 'Duzib114G0842' => 'dzi', 'Duzib114G0928' => 'dzi', 'Duzib114G1040' => 'dzi', 'Duzib116G0747' => 'dzi', 'Duzib138G0994' => 'dzi', 'Duzib144G0001' => 'dzi', 'Duzib151G0332' => 'dzi', 'Duzib170G0041' => 'dzi', 'Duzib187G1896' => 'dzi', 'Duzib205G0304' => 'dzi', 'Duzib205G1201' => 'dzi', 'Duzib205G1806' => 'dzi', 'Duzib212G0773' => 'dzi', 'ECA248G1170' => 'eca', 'ECA248G1667' => 'eca', 'ECA248G2383' => 'eca', 'ECA248G3422' => 'eca', 'EL10Ac5g12276' => 'bvu', 'EL10Ac6g15537' => 'bvu', 'EL10Ac9g22278' => 'bvu', 'Eucgr.D00030' => 'egr', 'Eucgr.D00928' => 'egr', 'Eucgr.D00934' => 'egr', 'Eucgr.D00935' => 'egr', 'Eucgr.D00941' => 'egr', 'Eucgr.D00947' => 'egr', 'Eucgr.D00949' => 'egr', 'Eucgr.D00951' => 'egr', 'Eucgr.D00953' => 'egr', 'Eucgr.D01209' => 'egr', 'Eucgr.D01210' => 'egr', 'Eucgr.D01212' => 'egr', 'Eucgr.D01337' => 'egr', 'Eucgr.D02131' => 'egr', 'Eucgr.D02654' => 'egr', 'Eucgr.E01529' => 'egr', 'Eucgr.E01532' => 'egr', 'Eucgr.E01641' => 'egr', 'Eucgr.E01644' => 'egr', 'Eucgr.E01646' => 'egr', 'Eucgr.E01648' => 'egr', 'Eucgr.E01649' => 'egr', 'Eucgr.E01651' => 'egr', 'Eucgr.E01652' => 'egr', 'Eucgr.E01654' => 'egr', 'Eucgr.E01669' => 'egr', 'Eucgr.E01675' => 'egr', 'Eucgr.E01684' => 'egr', 'Eucgr.E01691' => 'egr', 'Eucgr.E01693' => 'egr', 'Eucgr.E01798' => 'egr', 'Eucgr.E01844' => 'egr', 'Eucgr.E01868' => 'egr', 'Eucgr.E02671' => 'egr', 'Eucgr.G01207' => 'egr', 'Eucgr.H05144' => 'egr', 'Eucgr.H05145' => 'egr', 'Eucgr.L00102' => 'egr', 'Eucgr.L00103' => 'egr', 'Eucgr.L00105' => 'egr', 'Eucgr.L00111' => 'egr', 'Eucgr.L00113' => 'egr', 'Eucgr.L00115' => 'egr', 'Eucgr.L00118' => 'egr', 'Eucgr.L00120' => 'egr', 'Eucgr.L00121' => 'egr', 'Eucgr.L00123' => 'egr', 'Eucgr.L00132' => 'egr', 'Eucgr.L00133' => 'egr', 'Eucgr.L00134' => 'egr', 'Eucgr.L00135' => 'egr', 'Eucgr.L00139' => 'egr', 'Eucgr.L00141' => 'egr', 'Eucgr.L00142' => 'egr', 'Eucgr.L00144' => 'egr', 'Eucgr.L01132' => 'egr', 'Eucgr.L01133' => 'egr', 'Eucgr.L03296' => 'egr', 'FAN01G0752' => 'fan', 'FAN03G2567' => 'fan', 'FAN03G2598' => 'fan', 'FAN06G3463' => 'fan', 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'Gohir.D10G221350' => 'ghi', 'Gohir.D10G221400' => 'ghi', 'Gohir.D10G221501' => 'ghi', 'Gohir.D10G221600' => 'ghi', 'Gohir.D10G221625' => 'ghi', 'Gohir.D10G221650' => 'ghi', 'Gohir.D10G221675' => 'ghi', 'Gohir.D10G221900' => 'ghi', 'Gohir.D10G221950' => 'ghi', 'Gohir.D10G222000' => 'ghi', 'Gohir.D10G222111' => 'ghi', 'Gohir.D10G222122' => 'ghi', 'Gohir.D10G222133' => 'ghi', 'Gohir.D10G222144' => 'ghi', 'Gohir.D10G222155' => 'ghi', 'Gohir.D10G222166' => 'ghi', 'Gohir.D10G222177' => 'ghi', 'Gohir.D10G222188' => 'ghi', 'Gohir.D10G222200' => 'ghi', 'Gohir.D10G222300' => 'ghi', 'Gohir.D10G222400' => 'ghi', 'Gohir.D10G243600' => 'ghi', 'Gohir.D10G243700' => 'ghi', 'Gohir.D12G215600' => 'ghi', 'Gorai.003G176800' => 'gra', 'Gorai.003G178300' => 'gra', 'Gorai.003G178500' => 'gra', 'Gorai.004G068800' => 'gra', 'Gorai.004G069200' => 'gra', 'Gorai.004G192600' => 'gra', 'Gorai.004G288700' => 'gra', 'Gorai.004G288800' => 'gra', 'Gorai.004G288900' => 'gra', 'Gorai.004G289000' => 'gra', 'Gorai.004G289100' => 'gra', 'Gorai.004G289200' => 'gra', 'Gorai.004G289300' => 'gra', 'Gorai.004G289400' => 'gra', 'Gorai.004G289500' => 'gra', 'Gorai.004G289700' => 'gra', 'Gorai.006G099400' => 'gra', 'Gorai.006G099500' => 'gra', 'Gorai.008G231200' => 'gra', 'Gorai.009G311400' => 'gra', 'Gorai.009G317100' => 'gra', 'Gorai.009G317200' => 'gra', 'Gorai.009G317300' => 'gra', 'Gorai.009G317400' => 'gra', 'Gorai.009G317500' => 'gra', 'Gorai.009G317600' => 'gra', 'Gorai.011G163500' => 'gra', 'Gorai.011G249400' => 'gra', 'Gorai.011G249500' => 'gra', 'Gorai.011G249600' => 'gra', 'Gorai.011G249700' => 'gra', 'Gorai.011G249800' => 'gra', 'Gorai.011G249900' => 'gra', 'Gorai.011G250000' => 'gra', 'Gorai.011G250200' => 'gra', 'Gorai.011G250300' => 'gra', 'Gorai.011G250400' => 'gra', 'Gorai.011G250500' => 'gra', 'Gorai.011G250600' => 'gra', 'Gorai.011G250700' => 'gra', 'Gorai.011G250800' => 'gra', 'Gorai.011G250900' => 'gra', 'Gorai.011G251000' => 'gra', 'Gorai.011G251100' => 'gra', 'Gorai.011G251400' => 'gra', 'Gorai.011G251500' => 'gra', 'Gorai.011G251600' => 'gra', 'Gorai.011G251800' => 'gra', 'Gorai.011G251900' => 'gra', 'Gorai.011G252000' => 'gra', 'Gorai.011G252100' => 'gra', 'Gorai.011G252200' => 'gra', 'Gorai.011G252300' => 'gra', 'Gorai.011G252400' => 'gra', 'Gorai.011G252500' => 'gra', 'Gorai.011G252600' => 'gra', 'Gorai.011G252700' => 'gra', 'Gorai.011G252800' => 'gra', 'Gorai.011G280000' => 'gra', 'Gorai.011G280100' => 'gra', 'GSVIVG01003694001' => 'vvi', 'GSVIVG01003695001' => 'vvi', 'GSVIVG01024471001' => 'vvi', 'GSVIVG01030638001' => 'vvi', 'GSVIVG01037385001' => 'vvi', 'GSVIVG01037387001' => 'vvi', 'HanXRQChr01g0017701' => 'han', 'HanXRQChr11g0347131' => 'han', 'Haze_06620' => 'cav', 'Haze_08199' => 'cav', 'Haze_08200' => 'cav', 'Haze_08207' => 'cav', 'Haze_08208' => 'cav', 'Haze_08374' => 'cav', 'Haze_08376' => 'cav', 'Haze_08377' => 'cav', 'Haze_08379' => 'cav', 'Haze_08380' => 'cav', 'Haze_08381' => 'cav', 'Haze_08384' => 'cav', 'Haze_08385' => 'cav', 'Haze_08386' => 'cav', 'Haze_08387' => 'cav', 'Haze_08388' => 'cav', 'Haze_08389' => 'cav', 'Haze_08390' => 'cav', 'Haze_08391' => 'cav', 'Haze_08392' => 'cav', 'Haze_08393' => 'cav', 'Haze_08395' => 'cav', 'Haze_08396' => 'cav', 'Haze_08397' => 'cav', 'Haze_08398' => 'cav', 'Haze_08399' => 'cav', 'Haze_08400' => 'cav', 'Haze_08402' => 'cav', 'Haze_08404' => 'cav', 'Haze_08405' => 'cav', 'Haze_08406' => 'cav', 'Haze_08407' => 'cav', 'Haze_08408' => 'cav', 'Haze_08410' => 'cav', 'Haze_08413' => 'cav', 'Haze_08414' => 'cav', 'Haze_08415' => 'cav', 'Haze_08416' => 'cav', 'Haze_08417' => 'cav', 'Haze_08419' => 'cav', 'Haze_12822' => 'cav', 'Haze_12826' => 'cav', 'Haze_12829' => 'cav', 'Haze_12832' => 'cav', 'Haze_12833' => 'cav', 'Haze_12835' => 'cav', 'Haze_12836' => 'cav', 'Haze_12840' => 'cav', 'Haze_12841' => 'cav', 'Haze_13296' => 'cav', 'Haze_13657' => 'cav', 'Haze_16049' => 'cav', 'Haze_16050' => 'cav', 'Haze_16051' => 'cav', 'Haze_16057' => 'cav', 'Haze_16058' => 'cav', 'Haze_22256' => 'cav', 'Haze_24348' => 'cav', 'Hma1.2p1_0502F.1_g167920' => 'hma', 'Hma1.2p1_0502F.1_g167930' => 'hma', 'Hma1.2p1_0602F.1_g187500' => 'hma', 'Hma1.2p1_0602F.1_g187510' => 'hma', 'Hma1.2p1_1008F.1_g247240' => 'hma', 'Hma1.2p1_1008F.1_g247250' => 'hma', 'Hma1.2p1_1439F.1_g283450' => 'hma', 'Hma1.2p1_1439F.1_g283460' => 'hma', 'Hma1.2p1_1439F.1_g283470' => 'hma', 'Hma1.2p1_1439F.1_g283480' => 'hma', 'Hma1.2p1_2023F.1_g311410' => 'hma', 'Hma1.2p1_2411F.1_g321610' => 'hma', 'Hma1.2p1_2969F.1_g331030' => 'hma', 'Hma1.2p1_2969F.1_g331040' => 'hma', 'Hund00150' => 'sun', 'Lj1g0008219' => 'lja', 'Lj2A228T51' => 'lonja', 'Lj2A229T43' => 'lonja', 'Lj2C229T10' => 'lonja', 'Lj2C229T9' => 'lonja', 'Lj3A768T6' => 'lonja', 'Lj3A769T7' => 'lonja', 'Lj3g0000562' => 'lja', 'Lj3g0015410' => 'lja', 'Lj3g0016586' => 'lja', 'Lj4A495G13' => 'lonja', 'Lj4C504G0' => 'lonja', 'Lj4P505T12' => 'lonja', 'Lj4P505T13' => 'lonja', 'Lj7A549T54' => 'lonja', 'Lj7A549T55' => 'lonja', 'Lj7C549T9' => 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=> 'egut', 'Migut.B01505' => 'egut', 'Migut.E01202' => 'egut', 'Migut.E01203' => 'egut', 'Migut.E01204' => 'egut', 'Migut.E01205' => 'egut', 'Migut.H00730' => 'egut', 'Migut.N01728' => 'egut', 'Migut.N01729' => 'egut', 'MSTRG.13297' => 'ama', 'MSTRG.1840' => 'ama', 'MSTRG.1842' => 'ama', 'MSTRG.28141' => 'ama', 'MSTRG.4939' => 'ama', 'Nitab4.5_0000500g0320' => 'nta', 'Nitab4.5_0000563g0170' => 'nta', 'Nitab4.5_0000617g0140' => 'nta', 'Nitab4.5_0003567g0060' => 'nta', 'Nitab4.5_0003567g0080' => 'nta', 'Nitab4.5_0003567g0100' => 'nta', 'Nitab4.5_0007060g0010' => 'nta', 'Nitab4.5_0007588g0010' => 'nta', 'Nn1g09256' => 'nnu', 'Nn1g09257' => 'nnu', 'Nn2g15093' => 'nnu', 'Nn8g40300' => 'nnu', 'Oeu003130.1' => 'oeu', 'Oeu003133.1' => 'oeu', 'Oeu003135.1' => 'oeu', 'Oeu003136.1' => 'oeu', 'Oeu003137.1' => 'oeu', 'Oeu003141.1' => 'oeu', 'Oeu003147.1' => 'oeu', 'Oeu003148.1' => 'oeu', 'Oeu017013.1' => 'oeu', 'Oeu019259.1' => 'oeu', 'Oeu025141.1' => 'oeu', 'Oeu027082.1' => 'oeu', 'Oeu037431.2' => 'oeu', 'Oeu037433.1' => 'oeu', 'Oeu037434.1' => 'oeu', 'Oeu049848.1' => 'oeu', 'Oeu049849.1' => 'oeu', 'Oeu055404.1' => 'oeu', 'Oeu055407.1' => 'oeu', 'Peaxi162Scf00033g01513' => 'pax', 'Peaxi162Scf00033g01514' => 'pax', 'Peaxi162Scf00091g00066' => 'pax', 'Peaxi162Scf00103g10113' => 'pax', 'Peaxi162Scf00853g00424' => 'pax', 'PGR004G0158' => 'pgr', 'PGR004G0350' => 'pgr', 'PGR004G0706' => 'pgr', 'PGR004G1040' => 'pgr', 'PGR031G1030' => 'pgr', 'PGR031G3286' => 'pgr', 'PGR031G3290' => 'pgr', 'PGR031G3410' => 'pgr', 'PGR031G3521' => 'pgr', 'PGR142G3359' => 'pgr', 'PGR146G0003' => 'pgr', 'PGSC0003DMG400001697' => 'stu', 'PGSC0003DMG400001698' => 'stu', 'PGSC0003DMG400001730' => 'stu', 'PGSC0003DMG400005924' => 'stu', 'PGSC0003DMG400031156' => 'stu', 'PGSC0003DMG400031157' => 'stu', 'PGSC0003DMG400031159' => 'stu', 'PGSC0003DMG400031162' => 'stu', 'PGSC0003DMG400031164' => 'stu', 'Phvul.009G085000' => 'pvu', 'Phvul.011G163200' => 'pvu', 'Phvul.011G163300' => 'pvu', 'Phvul.011G163400' => 'pvu', 'Phvul.011G163800' => 'pvu', 'Phvul.011G163900' => 'pvu', 'Phvul.011G164100' => 'pvu', 'Phvul.011G164200' => 'pvu', 'Phvul.011G164400' => 'pvu', 'Phvul.011G167700' => 'pvu', 'Potri.012G113800' => 'ptr', 'Potri.013G017254' => 'ptr', 'Potri.018G119100' => 'ptr', 'Prupe.2G270400' => 'ppe', 'Prupe.5G057700' => 'ppe', 'Psat4g105000' => 'psa', 'Psat4g128400' => 'psa', 'Psat4g128440' => 'psa', 'Psat4g133840' => 'psa', 'Psat4g133880' => 'psa', 'Psat4g134000' => 'psa', 'Psat4g134040' => 'psa', 'Psat4g134080' => 'psa', 'Psat7g215560' => 'psa', 'PSO063G0367' => 'pso', 'PSO063G6971' => 'pso', 'PSO782G5375' => 'pso', 'QL01p000780' => 'qlo', 'QL01p000908' => 'qlo', 'QL01p001261' => 'qlo', 'QL01p007528' => 'qlo', 'QL01p008575' => 'qlo', 'QL01p008822' => 'qlo', 'QL01p008862' => 'qlo', 'QL01p008880' => 'qlo', 'QL01p008886' => 'qlo', 'QL01p008896' => 'qlo', 'QL01p008905' => 'qlo', 'QL01p008910' => 'qlo', 'QL01p009178' => 'qlo', 'QL01p009190' => 'qlo', 'QL01p009195' => 'qlo', 'QL01p009236' => 'qlo', 'QL01p009318' => 'qlo', 'QL01p009415' => 'qlo', 'QL01p009420' => 'qlo', 'QL01p009460' => 'qlo', 'QL01p009528' => 'qlo', 'QL01p009608' => 'qlo', 'QL01p016002' => 'qlo', 'QL04p000543' => 'qlo', 'QL04p000546' => 'qlo', 'QL04p000599' => 'qlo', 'QL04p002118' => 'qlo', 'QL04p002145' => 'qlo', 'QL04p002217' => 'qlo', 'QL04p002304' => 'qlo', 'QL04p002360' => 'qlo', 'QL06p034440' => 'qlo', 'QL06p034443' => 'qlo', 'QL08p043455' => 'qlo', 'QL08p043468' => 'qlo', 'QL08p043484' => 'qlo', 'QL09p027393' => 'qlo', 'QL09p051310' => 'qlo', 'QL09p051350' => 'qlo', 'QL09p051354' => 'qlo', 'QL09p051404' => 'qlo', 'QL09p051419' => 'qlo', 'QL09p051472' => 'qlo', 'QL09p051476' => 'qlo', 'QL10p001466' => 'qlo', 'QL10p001535' => 'qlo', 'RcHm_v2.0_Chr1g0373281' => 'rch', 'RcHm_v2.0_Chr1g0373291' => 'rch', 'RcHm_v2.0_Chr7g0205421' => 'rch', 'Rhsim08G0164800' => 'rsi', 'Rhsim08G0165000' => 'rsi', 'Rhsim08G0165400' => 'rsi', 'Rhsim08G0165500' => 'rsi', 'Rhsim08G0165600' => 'rsi', 'Rhsim08G0165800' => 'rsi', 'Rhsim08G0166500' => 'rsi', 'Rhsim10G0025200' => 'rsi', 'Rhsim10G0025700' => 'rsi', 'Rhsim10G0025900' => 'rsi', 'Rhsim12G0115600' => 'rsi', 'Sabra12G0082900' => 'sbr', 'Sabra13G0016100' => 'sbr', 'Sabra13G0016200' => 'sbr', 'Sabra14G0036100' => 'sbr', 'Sabra18G0103100' => 'sbr', 'Sabra18G0103600' => 'sbr', 'Sabra18G0104100' => 'sbr', 'SalBow1G1153' => 'sbo', 'SalBow1G4825' => 'sbo', 'SalBow5G3292' => 'sbo', 'SalBow5G3723' => 'sbo', 'Sed0012316' => 'sed', 'SGA_v2.0_scaffold521G52694' => 'sas', 'Solyc01g088810.4' => 'sly', 'Solyc01g088830.2' => 'sly', 'Solyc06g074280.2' => 'sly', 'Sopen01g035670' => 'spe', 'Sopen06g030730' => 'spe', 'Sp1g12850' => 'spa', 'Sp4g05120' => 'spa', 'Sp4g26790' => 'spa', 'Sp4g26800' => 'spa', 'Sp6g06460' => 'spa', 'Sp6g16580' => 'spa', 'Sp6g28600' => 'spa', 'Sp7g17120' => 'spa', 'SpUn1067_0010' => 'spa', 'TAR023G0002' => 'tar', 'TAR044G0002' => 'tar', 'TAR058G0001' => 'tar', 'TAR369G0390' => 'tar', 'TAR374G0103' => 'tar', 'TAR374G0123' => 'tar', 'TAR374G0158' => 'tar', 'TAR374G0471' => 'tar', 'TAR374G0960' => 'tar', 'TAR374G1225' => 'tar', 'TAR374G1370' => 'tar', 'TAR374G1496' => 'tar', 'TAR374G1657' => 'tar', 'TAR375G0088' => 'tar', 'TAR375G0184' => 'tar', 'TAR375G0208' => 'tar', 'TAR375G0285' => 'tar', 'TAR375G0399' => 'tar', 'TAR375G0651' => 'tar', 'TAR375G0700' => 'tar', 'TAR375G1019' => 'tar', 'TAR375G1069' => 'tar', 'TAR375G1115' => 'tar', 'THA.LOC104799245' => 'tha', 'THA.LOC104808351' => 'tha', 'THA.LOC104811543' => 'tha', 'THA.LOC104813058' => 'tha', 'THA.LOC104815248' => 'tha', 'THA.LOC104820697' => 'tha', 'THA.LOC104820906' => 'tha', 'THA.LOC104827414' => 'tha', 'Thecc.01G132000' => 'tca', 'Thecc.01G132100' => 'tca', 'Thecc.01G132200' => 'tca', 'Thecc.01G132500' => 'tca', 'Thecc.01G398300' => 'tca', 'Thecc.01G398600' => 'tca', 'Thecc.01G398800' => 'tca', 'Thecc.01G399500' => 'tca', 'Thecc.01G399900' => 'tca', 'Thecc.01G400000' => 'tca', 'Thecc.03G145400' => 'tca', 'Thecc.03G145500' => 'tca', 'Thecc.03G241000' => 'tca', 'Thecc.03G241100' => 'tca', 'Thecc.03G241200' => 'tca', 'Thecc.03G241400' => 'tca', 'Thecc.03G241500' => 'tca', 'Thecc.03G241600' => 'tca', 'Thecc.04G134600' => 'tca', 'Thecc.04G134700' => 'tca', 'Thecc.07G096500' => 'tca', 'Thecc.07G096600' => 'tca', 'Thecc.07G096900' => 'tca', 'Thecc.09G311100' => 'tca', 'Thecc.10G052600' => 'tca', 'Thecc.10G052700' => 'tca', 'Thecc.10G053000' => 'tca', 'Thecc.10G053100' => 'tca', 'Thecc.10G053200' => 'tca', 'Thecc.10G053300' => 'tca', 'Thecc.10G053400' => 'tca', 'Thecc.10G053500' => 'tca', 'Thecc.10G053600' => 'tca', 'Thecc.10G053800' => 'tca', 'Thecc.10G053900' => 'tca', 'Thecc.10G054000' => 'tca', 'Thecc.10G054100' => 'tca', 'Thecc.10G054200' => 'tca', 'Thecc.10G054300' => 'tca', 'Thecc.10G054400' => 'tca', 'Thecc.10G054500' => 'tca', 'Thecc.10G054700' => 'tca', 'Thecc.10G054800' => 'tca', 'Thecc.10G054900' => 'tca', 'Thecc.10G055000' => 'tca', 'Thecc.10G055100' => 'tca', 'Thecc.10G055200' => 'tca', 'Thecc.10G055300' => 'tca', 'Thecc.10G055400' => 'tca', 'Thecc.10G055500' => 'tca', 'Thecc.10G055600' => 'tca', 'Thecc.10G055700' => 'tca', 'Thecc.10G055800' => 'tca', 'Thecc.10G055900' => 'tca', 'Thecc.10G056000' => 'tca', 'Thecc.10G056100' => 'tca', 'Thecc.10G056200' => 'tca', 'Thecc.10G056300' => 'tca', 'Thecc.10G056400' => 'tca', 'Thecc.10G056500' => 'tca', 'Thecc.10G056600' => 'tca', 'Thecc.10G056700' => 'tca', 'Thecc.10G059300' => 'tca', 'Thecc.10G059400' => 'tca', 'Thecc.10G095400' => 'tca', 'Thecc.10G095500' => 'tca', 'Thecc.10G095700' => 'tca', 'Thecc.10G096000' => 'tca', 'Thecc.10G096100' => 'tca', 'Thecc.10G151300' => 'tca', 'Thhalv10001761m.g' => 'esa', 'Thhalv10001799m.g' => 'esa', 'Thhalv10009831m.g' => 'esa', 'Thhalv10013476m.g' => 'esa', 'Thhalv10013583m.g' => 'esa', 'Thhalv10013813m.g' => 'esa', 'Thhalv10027198m.g' => 'esa', 'Thhalv10028610m.g' => 'esa', 'Thhalv10028682m.g' => 'esa', 'Thhalv10029125m.g' => 'esa', 'Thhalv10029234m.g' => 'esa', 'Thhalv10029246m.g' => 'esa', 'Thhalv10029310m.g' => 'esa', 'Thhalv10029378m.g' => 'esa', 'Thhalv10029390m.g' => 'esa', 'Thhalv10029494m.g' => 'esa', 'TPR.G10204' => 'tpr', 'TPR.G13724' => 'tpr', 'TPR.G15136' => 'tpr', 'TPR.G15146' => 'tpr', 'TPR.G17371' => 'tpr', 'TPR.G17846' => 'tpr', 'TPR.G22961' => 'tpr', 'TPR.G26544' => 'tpr', 'TPR.G29442' => 'tpr', 'TPR.G29443' => 'tpr', 'TPR.G30318' => 'tpr', 'TPR.G33840' => 'tpr', 'TPR.G35327' => 'tpr', 'TPR.G36285' => 'tpr', 'TWI23G0989' => 'twi', 'TWI23G1193' => 'twi', 'TWI23G1224' => 'twi', 'TWI81G0280' => 'twi', 'unitig_37.g12239' => 'ugi', 'unitig_8.g3475' => 'ugi', 'unitig_8.g3476' => 'ugi', 'unitig_8.g3480' => 'ugi', 'unitig_8.g3482' => 'ugi', 'VMungo0174G0001' => 'vmu', 'VMungo0464G1260' => 'vmu', 'VMungo0720G2872' => 'vmu', 'VMungo1309G0918' => 'vmu' ) $gf_id = 'HOM05D000480' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000480' ) $data_identifier = 'HOM05D000480' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 42, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 61, 'bol' => (int) 24, 'bra' => (int) 15, 'can' => (int) 14, 'cansat' => (int) 7, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 5, 'ccan' => (int) 10, 'cfa' => (int) 41, 'ccl' => (int) 28, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 4, 'camsi' => (int) 4, 'dca' => (int) 2, 'din' => (int) 30, 'dzi' => (int) 30, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 58, 'fan' => (int) 8, 'fve' => (int) 2, 'gma' => (int) 8, 'ghi' => (int) 80, 'gra' => (int) 60, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 58, 'hma' => (int) 14, 'sun' => (int) 1, 'lja' => (int) 4, 'lonja' => (int) 14, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 15, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 19, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 9, 'pvu' => (int) 10, 'ptr' => (int) 3, 'ppe' => (int) 2, 'psa' => (int) 9, 'pso' => (int) 3, 'qlo' => (int) 46, 'rch' => (int) 3, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 2, 'spa' => (int) 9, 'tar' => (int) 23, 'tha' => (int) 8, 'tca' => (int) 70, 'esa' => (int) 16, 'tpr' => (int) 14, 'twi' => (int) 4, 'ugi' => (int) 5, 'vmu' => (int) 4 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G0918' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1